smitaswaika,
Can you explain this issue in more details?
If you mean CutEditor automatically remove the javaScript and you want to keep javaScript in your code, please set EnableStripScriptTags to false.
Editor.EnableStripScriptTags Property
Specifies whether to remove inject script before write the string into the db. When this property is set to true (the default) Cute Editor strips all script elements and script contents from the html.
This property can only be set in the code.
<CE:Editor id="Editor1" runat="server" EnableStripScriptTags="false"></CE:Editor>
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