Well,
For the sake of anyone who might stumble upon this problem in the future:
Edit the following file:
CuteSoft_Client\CuteEditor\Dialogs\colorpicker.aspx
Use code similar to the following:
<br />
<style type="text/css">
.ph_picker a {float:left;width:11px;height:11px;font-size:0em;border:1px solid black;margin:2px;display:block;}
.ph_picker div {float:left;height:11px;vertical-align:middle;}
</style>
<table width="100%">
<tr>
<td class="ph_picker">
<div>Custom Colours:</div>
<a href="#" title="#ce0815" onclick="document.getElementById('val_v').value = '#ce0815';return false;" style="background-color:#ce0815;"><br /></a>
<a href="#" title="#444444" onclick="document.getElementById('val_v').value = '#444444';return false;" style="background-color:#444444;"><br /></a>
<a href="#" title="#aaaaaa" onclick="document.getElementById('val_v').value = '#aaaaaa';return false;" style="background-color:#aaaaaa;"><br /></a>
</td>
</tr>
</table>