Sure, it is exactly as it got unzipped:

 

websiteRoot/CuteEditor_Files/CuteEditor_Files

My bin dir (spell checker working like a charm):

websiteRoot/bin

I zipped the whole site and copied it onto another machine (live server) the structure is the same. I am in defence environment, we do not have USB's or CD's I zipped the site and then split the zipped file then joined it back together (transfered all files by floppy) would this have an effect?

Mate everthing is working so nice on my laptop, its a mirror image on the server